Subread

The Subread package comprises a suite of software programs for processing next-gen sequencing read data like Subread, Subjunc, featureCounts, and exactSNP.

Availability and Restrictions

Versions

The following versions of Subread are available on OSC clusters:

Version Oakley owens
1.5.0-p2 X* X*
* Current default version

You can use  module spider subread to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

Subread is available to all OSC users without restriction.

Publisher/Vendor/Repository and License Type

http://subread.sourceforge.net, Open source

Usage

Usage on Oakley

Set-up

To configure your environment for use of Subread, run the following command: module load subread. The default version will be loaded. To select a particular Subread version, use module load subread/version. For example, use  module load subread/1.5.0-p2 to load Subread 1.5.0-p2.

Usage on Owens

Set-up

To configure your environment for use of Subread, run the following command: module load subread. The default version will be loaded. To select a particular Subread version, use module load subread/version. For example, use module load subread/1.5.0-p2 to load Subread 1.5.0-p2.

Further Reading

Supercomputer: 
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