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  2. Client Resources/
  3. Available Software/
  4. Software List

Software List

Ohio Supercomputer Center (OSC) has a variety of software applications to support all aspects of scientific research. We are actively updating this documentation to ensure it matches the state of the supercomputers. This page is currently missing some content; use module spider on each system for a comprehensive list of available software.

Supercomputer: 
Owens
Service: 
Software
  • Abaqus
  • AFNI
  • AMBER
  • ANSYS
  • AlphaFold 3
  • AlphaFold
  • Altair HyperWorks
  • Apptainer (formerly Singularity)
  • AutoDock
  • BCFtools
  • BLAS
  • BLAST
  • BWA
  • Blender
  • Boost
  • Bowtie
  • Bowtie2
  • CMake
  • COMSOL
  • CP2K
  • CUDA
  • Cell Ranger
  • Connectome Workbench
  • Cufflinks
  • DSI Studio
  • Darshan
  • Desmond
  • FFTW
  • FSL
  • FastQC
  • FreeSurfer
  • GAMESS
  • GATK
  • GNU Compilers
  • GROMACS
  • GSL
  • Gaussian
  • Git
  • Gurobi
  • HDF5
  • HISAT2
  • HPC Toolkit
  • HTSlib
  • Intel Compilers
  • Intel MPI (Old)
  • Intel MPI
  • Intel Math Kernel Library
  • Java
  • Julia
  • LAMMPS
  • LAPACK
  • LS-DYNA
  • Linaro HPC tools
  • MATLAB
  • MRIQC
  • MRIcroGL
  • MVAPICH
  • MVAPICH2
  • Mathematica
  • Miniconda3
  • NAMD
  • NCCL
  • NVHPC
  • Ncview
  • NetCDF
  • Neuropointillist
  • Nextflow
  • Nodejs
  • ORCA
  • Ollama
  • OpenACC
  • OpenCV
  • OpenFOAM
  • OpenMP
  • OpenMPI
  • ParaView
  • Parallel-netCDF
  • Perl
  • Picard
  • Podman
  • PyTorch
  • Python
  • Q-Chem
  • QGIS
  • Quantum ESPRESSO
  • R and Rstudio
  • RELION
  • Rosetta
  • Ruby
  • Rust
  • SAMtools
  • SRA Toolkit
  • STAR
  • STAR-CCM+
  • Schrodinger
  • Scipion
  • SnpEff
  • Spark
  • Stata
  • Subread
  • Texlive
  • Tinker
  • Trimmomatic
  • TurboVNC
  • VASP
  • VCFtools
  • VMD
  • VirtualGL
  • VisIt
  • WARP3D
  • WCStools
  • XFdtd
  • aocc
  • bedtools
  • dcm2nii
  • fMRIPrep
  • ffmpeg
  • oneAPI
  • parallel-command-processor
‹ BLAST Database up Abaqus ›
  • Printer-friendly version

Client Resources

  • Getting Started
    • New User Resource Guide
    • HPC Basics
    • Getting Connected
    • Budgets and Accounts
      • Applying for Academic Accounts
    • UNIX Basics
      • Linux Command Line Fundamentals
      • Linux Tutorial
      • Tar Tutorial
      • Unix Shortcuts
    • Classroom Project Resource Guide
      • Classroom Guide for Students
      • Using Jupyter for Classroom
      • Using Rstudio for classroom
      • Using nbgrader for Classroom
    • HOWTO
      • HOW TO: Look at requested time accuracy using XDMoD
      • HOWTO: Add and Use DUO MFA
      • HOWTO: Collect performance data for your program
      • HOWTO: Create and Manage Python Environments
        • HOWTO: Install Tensorflow locally
        • HOWTO: Install Python packages from source
        • HOWTO: Use GPU with Tensorflow and PyTorch
      • HOWTO: Debugging Tips
      • HOWTO: Establish durable SSH connections
      • HOWTO: Estimating and Profiling GPU Memory Usage for Generative AI
      • HOWTO: Identify users on a project account and check status
      • HOWTO: Install a MATLAB toolbox
      • HOWTO: Install your own Perl modules
      • HOWTO: Locally Installing Software
      • HOWTO: Manage Access Control List (ACLs)
        • HOWTO: Use NFSv4 ACL
        • HOWTO: Use POSIX ACL
      • HOWTO: PyTorch Distributed Data Parallel (DDP)
      • HOWTO: PyTorch Fully Sharded Data Parallel (FSDP)
      • HOWTO: Reduce Disk Space Usage
      • HOWTO: Reduce GPU memory usage during ANN training and inference
      • HOWTO: Run Python in Parallel
      • HOWTO: Submit Homework to Repository at OSC
      • HOWTO: Submit multiple jobs using parameters
      • HOWTO: Tune Performance
      • HOWTO: Tune VASP Memory Usage
      • HOWTO: Use 'rclone' to Upload Data
      • HOWTO: Use 'rclone' to Upload Data from Google Drive
      • HOWTO: Use Address Sanitizer
      • HOWTO: Use Cron and OSCusage for Regular Emailed Reports
      • HOWTO: Use Docker and Apptainer/Singularity Containers at OSC
      • HOWTO: Use Extensions with JupyterLab
      • HOWTO: Use GPU in Python
      • HOWTO: Use Globus (Overview)
        • HOWTO: Use AWS S3 in Globus
        • HOWTO: Use OneDrive in Globus
        • HOWTO: Deploy your own endpoint on a server
      • HOWTO: Use Jupyter on OnDemand
      • HOWTO: Use VNC in a batch job
      • HOWTO: Use a Conda/Virtual Environment With Jupyter
      • HOWTO: Use an Externally Hosted License
      • HOWTO: Use ulimit command to set soft limits
      • HOWTO: test data transfer speed
    • Citation
    • New User Training
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      • OSCgetent
      • OSCprojects
      • OSCusage
      • gpu-seff
      • osc-seff
    • OSC User Code of Ethics
    • Supercomputing FAQ
    • Supercomputing Terms
  • Available Software
    • Browse Software
    • Community Software
    • License Server Status
    • Scientific Database List
      • BLAST Database
    • Software List
      • Abaqus
      • AFNI
      • AMBER
      • ANSYS
        • ANSYS Mechanical
        • CFX
        • FLUENT
        • Workbench Platform
      • AlphaFold 3
      • AlphaFold
      • Altair HyperWorks
      • Apptainer (formerly Singularity)
      • AutoDock
      • BCFtools
      • BLAS
      • BLAST
      • BWA
      • Blender
      • Boost
      • Bowtie
      • Bowtie2
      • CMake
      • COMSOL
        • Interactive Parallel COMSOL Job
      • CP2K
      • CUDA
      • Cell Ranger
      • Connectome Workbench
      • Cufflinks
      • DSI Studio
      • Darshan
      • Desmond
      • FFTW
      • FSL
      • FastQC
      • FreeSurfer
      • GAMESS
      • GATK
      • GNU Compilers
      • GROMACS
      • GSL
      • Gaussian
      • Git
      • Gurobi
      • HDF5
        • HDF5-Serial
      • HISAT2
      • HPC Toolkit
      • HTSlib
      • Intel Compilers
      • Intel MPI (Old)
      • Intel MPI
      • Intel Math Kernel Library
      • Java
      • Julia
      • LAMMPS
      • LAPACK
      • LS-DYNA
        • LS-OPT
        • LS-PrePost
        • User-Defined Material for LS-DYNA
      • Linaro HPC tools
        • Linaro Performance Reports
        • Linaro MAP
        • Linaro DDT
      • MATLAB
        • SPM
      • MRIQC
      • MRIcroGL
      • MVAPICH
      • MVAPICH2
      • Mathematica
      • Miniconda3
      • NAMD
      • NCCL
      • NVHPC
      • Ncview
      • NetCDF
        • NetCDF-Serial
      • Neuropointillist
      • Nextflow
      • Nodejs
      • ORCA
      • Ollama
      • OpenACC
      • OpenCV
      • OpenFOAM
      • OpenMP
      • OpenMPI
      • ParaView
      • Parallel-netCDF
      • Perl
      • Picard
      • Podman
      • PyTorch
      • Python
      • Q-Chem
      • QGIS
      • Quantum ESPRESSO
      • R and Rstudio
      • RELION
      • Rosetta
      • Ruby
      • Rust
      • SAMtools
      • SRA Toolkit
      • STAR
      • STAR-CCM+
        • Run STAR-CCM+ to STAR-CCM+ Coupling
      • Schrodinger
      • Scipion
      • SnpEff
      • Spark
      • Stata
      • Subread
      • Texlive
      • Tinker
      • Trimmomatic
      • TurboVNC
      • VASP
      • VCFtools
      • VMD
      • VirtualGL
      • VisIt
      • WARP3D
      • WCStools
      • XFdtd
      • aocc
      • bedtools
      • dcm2nii
      • fMRIPrep
      • ffmpeg
      • oneAPI
      • parallel-command-processor
    • Software Refresh
      • Updates to Oakley Application Software - September 2015
      • Updates to Ruby Application Software - September 2015
      • Software Refresh - February 2017
      • Software Refresh - August/September 2018
      • Software Refresh - May 2020
    • Statewide Software Licensing
      • Statewide Software-Altair
  • Storage Documentation
  • Technical Support
    • HPC Changelog
      • MVAPICH2 version 2.3 modules modified on Owens
    • Known issues
    • Search Documentation
    • Supercomputers
      • Ascend
        • Ascend Programming Environment
        • Ascend Software Environment
        • Batch Limit Rules
        • Available software list on Next Gen Ascend
        • OSU College of Medicine Compute Service
        • SSH key fingerprints
        • Technical Specifications
      • Cardinal
        • Technical Specifications
        • Cardinal Programming Environment
        • Cardinal Software Environment
        • Batch Limit Rules
        • Cardinal SSH key fingerprints
        • Migrating jobs from other clusters
      • Pitzer
        • Technical Specifications
        • Pitzer Programming Environment (PBS)
        • Pitzer Programming Environment (obsolete: RHEL 7)
        • Pitzer Programming Environment
        • Pitzer Software Environment
        • Using Software on Pitzer RHEL 7
        • Batch Limit Rules
        • Batch Limit Rules RHEL7
        • Citation
        • Pitzer SSH key fingerprints
        • Guidance on Requesting Resources on Pitzer
        • Pitzer OS Upgrade and Early User Program
      • GPU Computing
      • High Bandwidth Memory
    • Tutorials & Training
    • Batch Processing at OSC
      • Batch System Concepts
      • Batch Execution Environment
      • Job Scripts
      • Job Submission
      • Monitoring and Managing Your Job
      • Scheduling Policies and Limits
      • Slurm Directives Summary
      • Batch Environment Variable Summary
      • Batch-Related Command Summary
      • License software flag usage information
      • Messages from sbatch
      • Troubleshooting Batch Problems
      • batch email notifications
      • Slurm Migration
        • How to Prepare Slurm Job Scripts
        • How to Submit, Monitor and Manage Jobs
        • Steps on How to Submit Jobs
        • Slurm Migration Issues
    • Knowledge Base
      • Account Consolidation Guide
      • Community Accounts
      • Compilation Guide
      • Firewall and Proxy Settings
      • Job and storage charging
      • Out-of-Memory (OOM) or Excessive Memory Usage
      • Thread Usage Best Practices
      • XDMoD Tool
        • Job Viewer
        • XDMoD - Checking Job Efficiency
  • Gateways
    • Client Portal
      • Self-Signup for Accounts
      • Change or Reset Password and Retrieve Usernames
      • Adding grant information
      • Check usage costs for current fiscal year
      • Invite, add, remove users
      • Limiting charges with budgets
      • Manage profile information
      • Multi-factor authentication
      • Project review and special properties
      • Projects, budgets and charge accounts
      • billing statements
      • HPC Job Activity tool
      • Interactive Reporting
    • OnDemand
      • Desktop App Catalog
        • Accessing Parallel R tutorial
        • OnDemand Desktop App: MATLAB
        • OnDemand Desktop App: RStudio Server
      • File Transfer and Management
      • Job Management
  • Facilitation
  • Data Storage
    • Overview of File Systems
    • Storage Hardware
    • 2016 Storage Service Upgrades
    • 2020 Storage Service Upgrades
    • 2022 Storage Service Upgrades
    • Protected Data Service
      • Manage the protected data and its access
      • Securely transferring files to protected data location
  • Security, Accessibility, and Policies
    • Proposed OSC Policies for Public Comments
  • Service Costs
    • FY26 budgets: Action may be required
    • Service Terms

Upcoming Events

System Downtime August 19 2025
Aug 19 2025 - 7:00am to 9:00pm
more

Recent News

Columbus, Ohio - July 24: Smaller colleges look to Open OnDemand to meet unique research computing needs
Columbus, Ohio - July 17: Ohio State researchers explore how physical activity impacts memory
Columbus, Ohio - July 1: Ohio Supercomputer Center releases 2024-2025 Research Report
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