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Owens, Pitzer
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens
Gurobi is a mathematical optimization solver that supports a variety of programming and modeling languages.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens
LS-OPT is a package for design optimization, system identification, and probabilistic analysis with an interface to LS-DYNA.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens, Pitzer
Clustal W is a multiple sequence alignment program written in C++.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens, Pitzer
MUSCLE is a program for creating multiple alignments of protein sequences.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens, Ruby
This documentation describes how to install tensorflow package locally in your $HOME space.
Load python module
module load python/3.6-conda5.2
Clone python installation to local directory
Three alternative create commands are listed. These cover the most common cases:
Owens, Pitzer
- "Horovod is a distributed training framework for TensorFlow, Keras, PyTorch, and MXNet. The goal of Horovod is to make distributed Deep Learning fast and easy to use. The primary motivation for this project is to make it easy to take a single-GPU TensorFlow program and successfully train it on many GPUs faster."
Quote from Horovod Github documentation.
Owens, Pitzer
metilene is a software tool to annotate differentally methylated regions and differentially methylated CpG sites.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens, Pitzer, Ruby
Introduction
OSCprojects is a command developed at OSC for use on OSC's systems and is used to view your logged in accounts project information.
