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Owens, Pitzer

QGIS is a user friendly Open Source Geographic Information System (GIS) licensed under the GNU General Public License. QGIS is an official project of the Open Source Geospatial Foundation (OSGeo). It runs on Linux, Unix, Mac OSX, Windows and Android and supports numerous vector, raster, and database formats and functionalities.

Availability and Restrictions

Versions

The following versions of QGIS are available on OSC clusters:

Owens, Pitzer, Ruby

Gaussian is the most popular general purpose electronic structure program. Recent versions can perform density functional theory, Hartree-Fock, Möller-Plesset, coupled-cluster, and configuration interaction calculations among others. Geometry optimizations, vibrational frequencies, magnetic properties, and solution modeling are available. It performs well as black-box software on closed-shell ground state systems. 

Owens, Pitzer, Ruby

The XDMoD tool at xdmod.osc.edu can be used to get an overview of how accurate the requested wall-time of jobs are with the actual wall-time of jobs.

The requested wall-time is the amount of time that one wants to reserve resources.

#PBS -l walltime=xx:xx:xx

The actual walltime is how long the job held the reserved resources before completing. It will be related to one in the job output file with filename

Owens, Pitzer

Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Owens

Gurobi is a mathematical optimization solver that supports a variety of programming and modeling languages.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Owens

LS-OPT is a package for design optimization, system identification, and probabilistic analysis with an interface to LS-DYNA.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Owens, Pitzer

Clustal W is a multiple sequence alignment program written in C++.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Owens, Pitzer

MUSCLE is a program for creating multiple alignments of protein sequences.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

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