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Owens, Pitzer
QGIS is a user friendly Open Source Geographic Information System (GIS) licensed under the GNU General Public License. QGIS is an official project of the Open Source Geospatial Foundation (OSGeo). It runs on Linux, Unix, Mac OSX, Windows and Android and supports numerous vector, raster, and database formats and functionalities.
Availability and Restrictions
Versions
The following versions of QGIS are available on OSC clusters:
Owens, Pitzer, Ruby
Gaussian is the most popular general purpose electronic structure program. Recent versions can perform density functional theory, Hartree-Fock, Möller-Plesset, coupled-cluster, and configuration interaction calculations among others. Geometry optimizations, vibrational frequencies, magnetic properties, and solution modeling are available. It performs well as black-box software on closed-shell ground state systems.
Owens, Pitzer, Ruby
The XDMoD tool at xdmod.osc.edu can be used to get an overview of how accurate the requested wall-time of jobs are with the actual wall-time of jobs.
The requested wall-time is the amount of time that one wants to reserve resources.
#PBS -l walltime=xx:xx:xx
The actual walltime is how long the job held the reserved resources before completing. It will be related to one in the job output file with filename
Owens, Pitzer
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens
Gurobi is a mathematical optimization solver that supports a variety of programming and modeling languages.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens
LS-OPT is a package for design optimization, system identification, and probabilistic analysis with an interface to LS-DYNA.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens, Pitzer
Clustal W is a multiple sequence alignment program written in C++.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens, Pitzer
MUSCLE is a program for creating multiple alignments of protein sequences.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens, Pitzer
