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Statewide Users Group Conference Agenda - April 9, 2020

Owens, Pitzer

In March 2020, OSC expanded the existing project and scratch storage filesystems by 8.6 petabytes. Adding the existing storage capacity at OSC, this brings the total storage capacity of OSC to ~14 petabytes.

Owens

LS-PrePost is an ad­vanced pre and post-proces­sor that is de­liv­ered free with LS-DY­NA.

Availability and Restrictions

Versions

The following versions of ls-prepost are available on OSC clusters:

Globus Connect Server allows OSC users to share data with their collaborators who do not have OSC HPC account (the collaborator needs to sign up for a free Globus account though). The advantage of data sharing via Globus is that you do not have to move your data in order to share it. You can select directory paths to be securely shared with your collaborator, and grant them read-only or read-write access.

 

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Globus is a cloud-based service designed to let users move, share, and discover research data via a single interface, regardless of its location or number of files or size.

Owens, Pitzer

QGIS is a user friendly Open Source Geographic Information System (GIS) licensed under the GNU General Public License. QGIS is an official project of the Open Source Geospatial Foundation (OSGeo). It runs on Linux, Unix, Mac OSX, Windows and Android and supports numerous vector, raster, and database formats and functionalities.

Availability and Restrictions

Versions

The following versions of QGIS are available on OSC clusters:

Owens, Pitzer

Gaussian is a very popular general purpose electronic structure program. Recent versions can perform density functional theory, Hartree-Fock, Möller-Plesset, coupled-cluster, and configuration interaction calculations among others. Geometry optimizations, vibrational frequencies, magnetic properties, and solution modeling are available. It performs well as black-box software on closed-shell ground state systems. 

Owens, Pitzer

The XDMoD tool at xdmod.osc.edu can be used to get an overview of how accurate the requested time of jobs are with the elapsed time of jobs.

One way of specifying a time request is:

#SBATCH --time=xx:xx:xx

The elapsed time is how long the job ran for before completing. This can be obtained using the  sacct command.

Owens, Pitzer

Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

Owens

Gurobi is a mathematical optimization solver that supports a variety of programming and modeling languages.

Availability and Restrictions

Versions

The following versions of bedtools are available on OSC clusters:

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