Search Documentation

Search Documentation

Ascend
We use Slurm syntax for all the discussions on this page. Please check how to prepare slurm job script if your script is prepared in PBS syntax. 

Memory limit

Ascend

oneAPI is an open, cross-industry, standards-based, unified, multiarchitecture, multi-vendor programming model that delivers a common developer experience across accelerator architectures – for faster application performance, more productivity, and greater innovation. The oneAPI initiative encourages collaboration on the oneAPI specification and compatible oneAPI implementations across the ecosystem.

GSL

Ascend, Owens, Pitzer

GSL is a library of mathematical methods for C and C++ languages.

Ascend, Owens, Pitzer

Miniconda3 is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages, including pip, zlib and a few others.

Availability and Restrictions

Versions

Miniconda is available on the Ascend Cluster. The versions currently available at OSC are:

Owens, Pitzer

Clara Parabricks is a powerful toolkit designed for genomic analysis. It is primarily designed for GPU computation.

Ascend, Owens, Pitzer

In October 2022, OSC retires the Data Direct Networks (DDN) GRIDScaler system deployed in 2016 and expands the IBM Elastic Storage System (ESS) for both Project and global Scratch services. This expands the total capacity of Project and Scratch storage at OSC to ~16 petabytes with better performance.

Owens, Pitzer

CIAO (also known as Chandra Interactive Analysis of Observations) is a X-Ray telescope analysis software package for astronomical observation. CIAO focuses on the Chandra X-ray observatory. It contains a toolset used to analyze fits files and is commonly used in conjuction with DS9 and Sherpa, and focuses on data flexibility. 

DS9

Owens, Pitzer

SAOImageDS9 is a astronomical imaging and data visualization application. DS9 provides support for FITS images, binary tables, multiple frame buffers, region manipulation, and colormaps display options

Availability and Restrictions

The following versions of DS9 are available on OSC clusters:

Owens, Pitzer

WCStools is a program package designed for working with Images and the World Coordinate System. The aim of WCStools is to provide methods for relating pixels taken common astronomical images to sky coordinates.

Availability and Restrictions

The following versions of WCStools are available on OSC clusters:

Pitzer

Cell Ranger is a cell analysis library for generate feature-barcode matrices, perform Analysis for RNA samples. Cell Ranger works in pipelines for it's RNA  sequencing analysis which allows it to: process raw sequencing output, read alignment, generate gene-cell matrices, and can perform downstream analyses such as clustering and gene expression analysis.

Pages