Changes to HPC systems are listed below, optionally filtered by system.
HPC Changelog
HPC Changelog
[Jupyter+Spark] Worker and executor memory update
The Jupyter+Spark app now configures worker memory based on the job's memory limit and the number of workers.
cellranger 7.2.0 is now available on Ascend
module load cellranger/7.2.0
[Jupyter+Spark] Allow for choice of Python
The Jupyter+Spark app now allows you to choose the Python version. You can specify a Python version that matches the one used in your Conda environment. This ensures compatibility when setting up the Spark cluster and helps prevent issues related to Python version mismatches.
Code Server 4.8.3 available on Cardinal
Code Server 4.8.3 is now available via module and OnDemand Code Server app on Cardinal.
warp3d/18.4.0 is available on Cardinal
warp3d/18.4.0 is available on Cardinal via module load warp3d/18.4.0
Desmond 2024-4 is available on Cardinal and Ascend
Desmond 2024-4 has been installed on Cardinal and Ascend. Note that the vendor has changed their version syntax from a dot to a dash, but we have kept the dot syntax for our modules. These are GPU enabled installations. Usage is via the module desmond/2024.4.
trimmomatic/0.38 is available on Ascend
module load trimmomatic/0.38