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Pitzer

HDF5 is a general purpose library and file format for storing scientific data. HDF5 can store two primary objects: datasets and groups. A dataset is essentially a multidimensional array of data elements, and a group is a structure for organizing objects in an HDF5 file. Using these two basic objects, one can create and store almost any kind of scientific data structure, such as images, arrays of vectors, and structured and unstructured grids.

For mpi-dependent codes, use the non-serial HDF5 module.

Owens

This  document will guide you on how to launch Rstudio App and acess Parallel R workshop material through OSC onDemand.

Step 1: Log on to https://ondemand.osc.edu. Please see this guide on how to use OnDemand service.

Step 2: Launch Rstudio App

Beofre creating a new collection, please set up a S3 bucket and configure the IAM access permissions to that bucket. If you need more information on how to do that, see the AWS S3 documentation and Amazon Web Services S3 Connector pages.

Ascend, Cardinal, Pitzer

Connectome Workbench is an open source, freely available visualization and analysis tool for neuroimaging data, especially data generated by the Human Connectome Project.

Availability and Restrictions

Versions

Connectome Workbench is available on Pitzer and Cardinal clusters. These are the versions currently available:

Statewide Users Group Conference Agenda - April 9, 2020

Owens, Pitzer

In March 2020, OSC expanded the existing project and scratch storage filesystems by 8.6 petabytes. Adding the existing storage capacity at OSC, this brings the total storage capacity of OSC to ~14 petabytes.

Cardinal

LS-PrePost is an ad­vanced pre and post-proces­sor that is de­liv­ered free with LS-DY­NA.

Availability and Restrictions

Versions

The following versions of ls-prepost are available on OSC clusters:

Globus_logo_BLUE_square_mark_1.png

 

Globus is a cloud-based service designed to let users move, share, and discover research data via a single interface, regardless of its location or number of files or size.

Pitzer

QGIS is a user friendly Open Source Geographic Information System (GIS) licensed under the GNU General Public License. QGIS is an official project of the Open Source Geospatial Foundation (OSGeo). It runs on Linux, Unix, Mac OSX, Windows and Android and supports numerous vector, raster, and database formats and functionalities.

Availability and Restrictions

Versions

The following versions of QGIS are available on OSC clusters:

Ascend, Cardinal, Pitzer

Gaussian is a very popular general purpose electronic structure program. Recent versions can perform density functional theory, Hartree-Fock, Möller-Plesset, coupled-cluster, and configuration interaction calculations among others. Geometry optimizations, vibrational frequencies, magnetic properties, and solution modeling are available. It performs well as black-box software on closed-shell ground state systems. 

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