Search our client documentation below, optionally filtered by one or more systems.
Supercomputer:
Search Documentation
Search Documentation
Globus is a cloud-based service designed to let users move, share, and discover research data via a single interface, regardless of its location or number of files or size.
Owens, Pitzer
QGIS is a user friendly Open Source Geographic Information System (GIS) licensed under the GNU General Public License. QGIS is an official project of the Open Source Geospatial Foundation (OSGeo). It runs on Linux, Unix, Mac OSX, Windows and Android and supports numerous vector, raster, and database formats and functionalities.
Availability and Restrictions
Versions
The following versions of QGIS are available on OSC clusters:
Ascend, Cardinal, Owens, Pitzer
Gaussian is a very popular general purpose electronic structure program. Recent versions can perform density functional theory, Hartree-Fock, Möller-Plesset, coupled-cluster, and configuration interaction calculations among others. Geometry optimizations, vibrational frequencies, magnetic properties, and solution modeling are available. It performs well as black-box software on closed-shell ground state systems.
Ascend, Owens, Pitzer
The XDMoD tool at xdmod.osc.edu can be used to get an overview of how accurate the requested time of jobs are with the elapsed time of jobs.
To request an amount of time for a job, you can use the following header.
#SBATCH --time=xx:xx:xx
The elapsed time is how long the job ran for before completing. This can be obtained for completed jobs using the sacct command.
Owens, Pitzer
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Cardinal, Owens
Gurobi is a mathematical optimization solver that supports a variety of programming and modeling languages.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens
LS-OPT is a package for design optimization, system identification, and probabilistic analysis with an interface to LS-DYNA.
Availability and Restrictions
Versions
The following versions of ls-opt are available on OSC clusters:
Owens, Pitzer
Clustal W is a multiple sequence alignment program written in C++.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Owens, Pitzer
MUSCLE is a program for creating multiple alignments of protein sequences.
Availability and Restrictions
Versions
The following versions of bedtools are available on OSC clusters:
Ascend, Owens, Pitzer
