Changes to HPC systems are listed below, optionally filtered by system.
HPC Changelog
HPC Changelog
Amber 18 now available
Amber 18 has been installed on the Owens and Ruby clusters; usage is via the module amber/18. For information on available executables and installation details see the software page for Amber or the output of the module spider command, e.g.: module spider amber/18
VCFtools 0.1.16 available on Owens
VCFtools 0.1.16 is now available on Owens
SAMtools 1.9 is available
SAMtools 1.9 is now available on Owens
FastQC 0.11.7 is available
FastQC 0.11.7 is now available on Owens
Blender 2.79 is available
Blender 2.79 now is available on Owens.
cairo/1.14.2 module removed on Owens
On Owens, we removed cairo/1.14.2 module.
However, users still can access the system installation of Cairo and it doesn't require "module load cairo".
Wine 3.0.2 is available
Wine (only support Windows 64-bit binaries) is now available on Owens.
Blast Database update
Blast-database/2018-08 is now available.
Q-Chem 5.1 is available
Q-Chem MPICH-3 and OpenMP version are installed on Owens and Ruby. Usage is via the module qchem/5.1.1 for MPI version and via the module qchem/5.1.1-openmp for OpenMP version.
Julia 1.0.0 available on Owens
Usage is "module load julia/1.0.0". This version also works with Jupyter notebooks.