Search our client documentation below, optionally filtered by one or more systems.
The Ohio Supercomputer Center (OSC) is experiencing an email delivery problem with several types of messages from MyOSC.
The Ohio Supercomputer Center (OSC) is experiencing an email delivery problem with several types of messages from MyOSC.
Search our client documentation below, optionally filtered by one or more systems.
DSI Studio is a tractography software tool that maps brain connections and correlates findings with neuropsychological disorders. It is a collective implementation of several diffusion MRI methods, including diffusion tensor imaging (DTI), generalized q-sampling imaging (GQI), q-space diffeomorphic reconstruction (QSDR), diffusion MRI connectometry, and generalized deterministic fiber tracking.
MRIQC is a program that provides automatic prediction of quality and visual reporting of MRI scans.
The following versions are available on OSC clusters:
fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
We have licensed applications such as ansys, abaqus, and Schrodinger. These applications have a license server with a limited number of licenses, and you need to check out the licenses when you use the software each time. One problem is that the job scheduler, Slurm, doesn't communicate with the license server. As a result, a job can be launched even there are not enough licenses available, and it fails due to insufficient licenses.
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data.
The following versions of Trinity are available on OSC clusters:
This document is obsoleted and kept as a reference to previous Owens programming environment. Please refer to here for the latest version.
Transferring files securely to OSC involves understanding which commands/applications to use and which directory to use.
As we migrate to Slurm from Torque/Moab, there will be necessary software environment changes.
Old MVAPICH2 including mvapich2/2.1
, mvapich2/2.2
and its variants do not support Slurm very well due to its life span, so we will remove the following versions:
OSC clients who are affiliated with Ohio State can deploy their own endpoint on a server using OSU subscriptions. Please follow the steps below: