FASTX-Toolkit

The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

Availability and Restrictions

The following versions of FASTX-Toolkit are available on OSC clusters:

Version Oakley Owens
0.0.14 X* X*
*: Current default version

You can use  module spider fastx to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

FASTX-Toolkit is available to all OSC users without restriction.

Usage on Oakley

Set-up

To configure your environment for use of FASTX-Toolkit, run the following command:   module load fastx. The default version will be loaded. To select a particular FASTX-Toolkit version, use   module load fastx/version. For example, use  module load fastx/0.0.14 to load FASTX-Toolkit 0.0.14.

Usage on Owens

Set-up

To configure your environment for use of FASTX-Toolkit, run the following command:   module load fastx. The default version will be loaded. To select a particular FASTX-Toolkit version, use   module load fastx/version. For example, use  module load fastx/0.0.14 to load FASTX-Toolkit 0.0.14.

Further Reading

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