miRDeep2 is a completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs. The tool reports known and hundreds of novel microRNAs with high accuracy in seven species representing the major animal clades. The low consumption of time and memory combined with user-friendly interactive graphic output makes miRDeep2 accessible for straightforward application in current reasearch.
Availability and Restrictions
The following versions of miRDeep2 are available on OSC clusters:
You can use
module spider mirdeep2 to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.
miRDeep2 is available to all OSC users without restriction.
Publisher/Vendor/Repository and License Type
Marc Friedlaender and Sebastian Mackowiak, freeware
Usage on Owens
module load mirdeep2. The default version will be loaded. To select a particular miRDeep2 version, use
module load mirdeep2/version. For example, use
module load mirdeep2/22.214.171.124to load miRDeep2 126.96.36.199.