miRDeep2

miRDeep2 is a completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs. The tool reports known and hundreds of novel microRNAs with high accuracy in seven species representing the major animal clades. The low consumption of time and memory combined with user-friendly interactive graphic output makes miRDeep2 accessible for straightforward application in current reasearch.

Availability and Restrictions

The following versions of miRDeep2 are available on OSC clusters:

Version Oakley Owens
2.0.0.8 X* X*
*: Current default version

You can use  module spider mirdeep2  to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

miRDeep2 is available to all OSC users without restriction.

Usage on Oakley

Set-up

To configure your environment for use of miRDeep2, run the following command:   module load mirdeep2 . The default version will be loaded. To select a particular miRDeep2 version, use   module load mirdeep2/version . For example, use  module load mirdeep2/2.0.0.8   to load miRDeep2 2.0.0.8.

Usage on Owens

Set-up

To configure your environment for use of miRDeep2, run the following command:   module load mirdeep2 . The default version will be loaded. To select a particular miRDeep2 version, use   module load mirdeep2/version . For example, use  module load mirdeep2/2.0.0.8   to load miRDeep2 2.0.0.8.

Further Reading

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