STAR-Fusion

STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.

Availability and Restrictions

The following versions of STAR-Fusion are available on OSC clusters:

Version Oakley Owens
0.7.0 X* X*
*: Current default version

You can use  module spider star-fusion  to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

STAR-Fusion is available to all OSC users without restriction.

Usage on Oakley

Set-up

To configure your environment for use of STAR-Fusion, run the following command:   module load star-fusion  . The default version will be loaded. To select a particular STAR-Fusion version, use   module load star-fusion/version . For example, use  module load star-fusion/0.7.0  to load STAR-Fusion 0.7.0.

Usage on Owens

Set-up

To configure your environment for use of STAR-Fusion, run the following command:   module load star-fusion  . The default version will be loaded. To select a particular STAR-Fusion version, use  module load star-fusion/version . For example, use  module load star-fusion/0.7.0  to load STAR-Fusion 0.7.0.

Further Reading

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