GMAP

GMAP: a genomic mapping and alignment program for mRNA and EST sequences.

Availability and Restrictions

The following versions of GMAP are available on OSC clusters:

Version Oakley Owens
2016-05-25 X*  
2016-06-09   X*
*: Current default version

You can use  module spider gmap   to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

GMAP is available to all OSC users without restriction.

Usage on Oakley

Set-up

To configure your environment for use of GMAP, run the following command:   module load gmap . The default version will be loaded. To select a particular GMAP version, use   module load gmap/version . For example, use  module load gmap/2016-05-25  to load GMAP 2016-05-25.

Usage on Owens

Set-up

To configure your environment for use of GMAP, run the following command:   module load gmap . The default version will be loaded. To select a particular GMAP version, use   module load gmap/version . For example, use module load gmap/2016-06-09  to load GMAP 2016-06-09.

Further Reading

Service: 
Fields of Science: