On September 22nd, OSC switched to Slurm for job scheduling and resource management on the Pitzer Cluster, along with the deployment of the new Pitzer hardware. We are in the process of updating the example job scripts for each software. If a Slurm example is not yet available, please consult our general Slurm information page or contact OSC help.


GMAP is a genomic mapping and alignment program for mRNA and EST sequences.

Availability and Restrictions


The following versions of GMAP are available on OSC clusters:

Version Owens
2016-06-09 X*
* Current default version

You can use module spider gmap to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.


GMAP is available to all OSC users. If you have any questions, please contact OSC Help.

Publisher/Vendor/Repository and License Type

Genentech, Inc., Open source


Usage on Owens


To configure your environment for use of GMAP, run the following command: module load gmap. The default version will be loaded. To select a particular GMAP version, use module load gmap/version. For example, use module load gmap/2016-06-09 to load GMAP 2016-06-09.

Further Reading

Fields of Science: