GMAP

GMAP is a genomic mapping and alignment program for mRNA and EST sequences.

Availability and Restrictions

Versions

The following versions of GMAP are available on OSC clusters:

Version Oakley Owens
2016-05-25 X*  
2016-06-09   X*
* Current default version

You can use module spider gmap to view available modules for a given machine. Feel free to contact OSC Help if you need other versions for your work.

Access

GMAP is available to all OSC users without restriction.

Publisher/Vendor/Repository and License Type

Genentech, Inc., Open source

Usage

Usage on Oakley

Set-up

To configure your environment for use of GMAP, run the following command: module load gmap. The default version will be loaded. To select a particular GMAP version, use module load gmap/version. For example, use  module load gmap/2016-05-25 to load GMAP 2016-05-25.

Usage on Owens

Set-up

To configure your environment for use of GMAP, run the following command: module load gmap. The default version will be loaded. To select a particular GMAP version, use module load gmap/version. For example, use module load gmap/2016-06-09 to load GMAP 2016-06-09.

Further Reading

Supercomputer: 
Service: 
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