Changes to HPC systems are listed below, optionally filtered by system.
PAPI 5.6.0 is installed on Owens. Load module with module load papi/5.6.0
Abaqus ships with its own installation of Python which is incompatible with the system Python. Changes were made to the abaqus module on Oakley putting the Abaqus version of Python in the user's path. This may cause problems if the user runs non-Abaqus Python programs with the abaqus module loaded. Oakley only.
Gromacs 2016.4 has been installed on Owens; usage is via the module gromacs/2016.4.
R/3.4.2 is now available on Owens
Tensorflow 1.3 is now available on Owens
module load python/3.6
module load cuda/8.0.44
PGI 17.10 is now available on Owens, Oakley, and Ruby. Use with "module load pgi/17.10.0".
OpenMPI 2.1.2 is available on Owens for compilers gnu/4.8.5 and intel/16.0.3. Load compiler and use with "module load openmpi/2.1.2"
samtools/HTSlib 1.6 is available on Owens and Oakley.
module load htslib/1.6
module load samtools/1.6
relion2.0 is available on Owens.
module load relion2/2.0
Starccm 12.04.010 for mixed precision is available on oakley.
module load starccm/12.04.010-mixed